IL_8PV4_139

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8PV4|1|C1|U|3296

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_139 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.2198

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8PV4|1|C1|C|3290
8PV4|1|C1|C|3291
*
8PV4|1|C1|G|3294
8PV4|1|C1|U|3295
8PV4|1|C1|U|3296
8PV4|1|C1|G|3297

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LU

60S ribosomal protein L22-like protein