IL_8PV7_022
3D structure
- PDB id
- 8PV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.12 Å
Loop
- Sequence
- GAAUGUGG*UGUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8PV7|1|C1|U|526, 8PV7|1|C1|U|548
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV7_022 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1641
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PV7|1|C1|G|523
8PV7|1|C1|A|524
8PV7|1|C1|A|525
8PV7|1|C1|U|526
8PV7|1|C1|G|527
8PV7|1|C1|U|528
8PV7|1|C1|G|529
8PV7|1|C1|G|530
*
8PV7|1|C1|U|543
8PV7|1|C1|G|544
8PV7|1|C1|U|545
8PV7|1|C1|U|546
8PV7|1|C1|A|547
8PV7|1|C1|U|548
8PV7|1|C1|A|549
8PV7|1|C1|G|550
8PV7|1|C1|C|551
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cz
- rRNA-processing protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LS
- 60S ribosomal protein L20
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