IL_8PV7_050

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

UCUUGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8PV7|1|C1|U|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_050 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2022

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8PV7|1|C1|U|1201
8PV7|1|C1|C|1202
8PV7|1|C1|U|1203
8PV7|1|C1|U|1204
8PV7|1|C1|G|1205
8PV7|1|C1|A|1206
8PV7|1|C1|C|1207
8PV7|1|C1|A|1208
8PV7|1|C1|G|1209
*
8PV7|1|C1|C|1266
8PV7|1|C1|C|1267
8PV7|1|C1|G|1268
8PV7|1|C1|A|1269
8PV7|1|C1|A|1270

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CF

Large ribosomal subunit protein uL10

Chain Cz

rRNA-processing protein