IL_8PV7_066
3D structure
- PDB id
- 8PV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.12 Å
Loop
- Sequence
- UGAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV7_066 not in the Motif Atlas
- Homologous match to IL_8C3A_073
- Geometric discrepancy: 0.1155
- The information below is about IL_8C3A_073
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8PV7|1|C1|U|1625
8PV7|1|C1|G|1626
8PV7|1|C1|A|1627
8PV7|1|C1|A|1628
8PV7|1|C1|C|1629
*
8PV7|1|C1|G|1786
8PV7|1|C1|G|1787
8PV7|1|C1|G|1788
8PV7|1|C1|A|1789
8PV7|1|C1|G|1790
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lg
- Ribosomal protein l34-like protein
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