IL_8PV7_101

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_101 not in the Motif Atlas

Homologous match to IL_5TBW_099

Geometric discrepancy: 0.2069

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8PV7|1|C1|C|2625
8PV7|1|C1|A|2626
8PV7|1|C1|U|2627
*
8PV7|1|C1|A|2645
8PV7|1|C1|G|2646
8PV7|1|C1|U|2647
8PV7|1|C1|A|2648
8PV7|1|C1|G|2649

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LJ

Putative ribosomal protein