IL_8PV8_086
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8PV8|1|C1|U|2122, 8PV8|1|C1|U|2138, 8PV8|1|C1|C|2142
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_086 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0888
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PV8|1|C1|C|2119
8PV8|1|C1|G|2120
8PV8|1|C1|A|2121
8PV8|1|C1|U|2122
8PV8|1|C1|G|2123
8PV8|1|C1|G|2124
*
8PV8|1|C1|U|2136
8PV8|1|C1|G|2137
8PV8|1|C1|U|2138
8PV8|1|C1|U|2139
8PV8|1|C1|G|2140
8PV8|1|C1|A|2141
8PV8|1|C1|C|2142
8PV8|1|C1|G|2143
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CR
- Protein SDA1
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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