IL_8PV8_106

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV8_106 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2545

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8PV8|1|C1|U|2677
8PV8|1|C1|U|2678
8PV8|1|C1|G|2679
8PV8|1|C1|A|2680
*
8PV8|1|C1|U|2694
8PV8|1|C1|A|2695
8PV8|1|C1|C|2696
8PV8|1|C1|A|2697

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29