IL_8PVA_065
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVA_065 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.0821
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PVA|1|A|A|1430
8PVA|1|A|A|1431
8PVA|1|A|G|1432
8PVA|1|A|A|1433
8PVA|1|A|A|1434
8PVA|1|A|G|1435
*
8PVA|1|A|C|1466
8PVA|1|A|C|1467
8PVA|1|A|A|1468
8PVA|1|A|C|1469
8PVA|1|A|U|1470
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- Small ribosomal subunit protein bS20
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
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