IL_8PVA_105

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8PVA|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_105 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0428

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8PVA|1|a|U|1018
8PVA|1|a|U|1019
8PVA|1|a|A|1020
8PVA|1|a|A|1021
8PVA|1|a|G|1022
8PVA|1|a|U|1023
8PVA|1|a|G|1024
*
8PVA|1|a|C|1140
8PVA|1|a|U|1141
8PVA|1|a|A|1142
8PVA|1|a|A|1143
8PVA|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13