IL_8PVA_165

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8PVA|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_165 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.0585

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8PVA|1|a|C|2636
8PVA|1|a|U|2637
8PVA|1|a|G|2638
8PVA|1|a|A|2639
8PVA|1|a|G|2640
*
8PVA|1|a|C|2774
8PVA|1|a|G|2775
8PVA|1|a|A|2776
8PVA|1|a|G|2777
8PVA|1|a|A|2778
8PVA|1|a|U|2779
8PVA|1|a|G|2780
8PVA|1|a|A|2781
8PVA|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13