IL_8PVK_050
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- UCUUGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8PVK|1|C1|U|1204
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_050 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2094
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8PVK|1|C1|U|1201
8PVK|1|C1|C|1202
8PVK|1|C1|U|1203
8PVK|1|C1|U|1204
8PVK|1|C1|G|1205
8PVK|1|C1|A|1206
8PVK|1|C1|C|1207
8PVK|1|C1|A|1208
8PVK|1|C1|G|1209
*
8PVK|1|C1|C|1266
8PVK|1|C1|C|1267
8PVK|1|C1|G|1268
8PVK|1|C1|A|1269
8PVK|1|C1|A|1270
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain Cz
- rRNA-processing protein
Coloring options: