IL_8PVK_073
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- UGGAAAC*GGAGAUA
- Length
- 14 nucleotides
- Bulged bases
- 8PVK|1|C1|A|1696, 8PVK|1|C1|A|1709
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_073 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1338
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PVK|1|C1|U|1691
8PVK|1|C1|G|1692
8PVK|1|C1|G|1693
8PVK|1|C1|A|1694
8PVK|1|C1|A|1695
8PVK|1|C1|A|1696
8PVK|1|C1|C|1697
*
8PVK|1|C1|G|1707
8PVK|1|C1|G|1708
8PVK|1|C1|A|1709
8PVK|1|C1|G|1710
8PVK|1|C1|A|1711
8PVK|1|C1|U|1712
8PVK|1|C1|A|1713
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain LR
- Ribosomal protein L19
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein l30-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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