IL_8PVK_135

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUC*GUAAGC

Length

9 nucleotides

Bulged bases

8PVK|1|C1|G|3318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_135 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0678

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8PVK|1|C1|G|3269
8PVK|1|C1|U|3270
8PVK|1|C1|C|3271
*
8PVK|1|C1|G|3314
8PVK|1|C1|U|3315
8PVK|1|C1|A|3316
8PVK|1|C1|A|3317
8PVK|1|C1|G|3318
8PVK|1|C1|C|3319

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain LB

60S ribosomal protein L3-like protein

Chain Ld

Putative 60S ribosomal protein