IL_8PVL_044
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 8PVL|1|C1|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVL_044 not in the Motif Atlas
- Homologous match to IL_5TBW_048
- Geometric discrepancy: 0.0916
- The information below is about IL_5TBW_048
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8PVL|1|C1|U|1150
8PVL|1|C1|U|1151
8PVL|1|C1|A|1152
8PVL|1|C1|A|1153
8PVL|1|C1|G|1154
*
8PVL|1|C1|C|1311
8PVL|1|C1|C|1312
8PVL|1|C1|A|1313
8PVL|1|C1|U|1314
8PVL|1|C1|A|1315
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LQ
- Ribosomal protein L18-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
Coloring options: