IL_8PVL_047
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8PVL|1|C1|U|1174, 8PVL|1|C1|C|1175, 8PVL|1|C1|C|1299, 8PVL|1|C1|A|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVL_047 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1067
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8PVL|1|C1|C|1170
8PVL|1|C1|U|1171
8PVL|1|C1|C|1172
8PVL|1|C1|A|1173
8PVL|1|C1|U|1174
8PVL|1|C1|C|1175
8PVL|1|C1|A|1176
8PVL|1|C1|G|1177
*
8PVL|1|C1|C|1297
8PVL|1|C1|U|1298
8PVL|1|C1|C|1299
8PVL|1|C1|A|1300
8PVL|1|C1|A|1301
8PVL|1|C1|G|1302
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LS
- 60S ribosomal protein L20
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