IL_8PVL_118
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CUUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVL_118 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0914
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8PVL|1|C1|C|2976
8PVL|1|C1|U|2977
8PVL|1|C1|U|2978
8PVL|1|C1|A|2979
8PVL|1|C1|G|2980
8PVL|1|C1|U|2981
8PVL|1|C1|A|2982
8PVL|1|C1|C|2983
*
8PVL|1|C1|G|2988
8PVL|1|C1|G|2989
8PVL|1|C1|A|2990
8PVL|1|C1|A|2991
8PVL|1|C1|C|2992
8PVL|1|C1|C|2993
8PVL|1|C1|G|2994
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CN
- Eukaryotic translation initiation factor 6
- Chain CO
- DUF2423 domain-containing protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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