IL_8Q4F_030

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUU*GGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_030 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2282

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8Q4F|1|A|U|591
8Q4F|1|A|G|592
8Q4F|1|A|U|593
8Q4F|1|A|U|594
*
8Q4F|1|A|G|645
8Q4F|1|A|G|646
8Q4F|1|A|C|647
8Q4F|1|A|A|648

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain O

Small ribosomal subunit protein uS15

Chain Q

Small ribosomal subunit protein uS17