IL_8Q4F_035

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

8Q4F|1|A|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_035 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.1609

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8Q4F|1|A|U|605
8Q4F|1|A|G|606
8Q4F|1|A|A|607
8Q4F|1|A|A|608
8Q4F|1|A|A|609
8Q4F|1|A|U|610
8Q4F|1|A|C|611
8Q4F|1|A|C|612
*
8Q4F|1|A|G|628
8Q4F|1|A|A|629
8Q4F|1|A|A|630
8Q4F|1|A|C|631
8Q4F|1|A|U|632
8Q4F|1|A|G|633

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain H

Small ribosomal subunit protein uS8

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17