IL_8Q4F_085

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_085 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2343

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8Q4F|1|a|G|283
8Q4F|1|a|U|284
8Q4F|1|a|G|285
8Q4F|1|a|U|286
*
8Q4F|1|a|A|354
8Q4F|1|a|U|355
8Q4F|1|a|G|356
8Q4F|1|a|C|357

Current chains

Chain a

23S rRNA

Nearby chains