IL_8Q4F_149

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8Q4F|1|a|A|1801, 8Q4F|1|a|C|1816, 8Q4F|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_149 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1353

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8Q4F|1|a|U|1798
8Q4F|1|a|G|1799
8Q4F|1|a|C|1800
8Q4F|1|a|A|1801
8Q4F|1|a|A|1802
8Q4F|1|a|A|1803
8Q4F|1|a|C|1804
*
8Q4F|1|a|G|1813
8Q4F|1|a|G|1814
8Q4F|1|a|A|1815
8Q4F|1|a|C|1816
8Q4F|1|a|G|1817
8Q4F|1|a|U|1818
8Q4F|1|a|A|1819
8Q4F|1|a|U|1820
8Q4F|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2