IL_8Q4F_177

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8Q4F|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_177 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1188

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8Q4F|1|a|C|2636
8Q4F|1|a|U|2637
8Q4F|1|a|G|2638
8Q4F|1|a|A|2639
8Q4F|1|a|G|2640
*
8Q4F|1|a|C|2774
8Q4F|1|a|G|2775
8Q4F|1|a|A|2776
8Q4F|1|a|G|2777
8Q4F|1|a|A|2778
8Q4F|1|a|U|2779
8Q4F|1|a|G|2780
8Q4F|1|a|A|2781
8Q4F|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13