IL_8Q4F_212
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCA*UGCG
- Length
- 9 nucleotides
- Bulged bases
- 8Q4F|1|a|C|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_212 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.2818
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
8Q4F|1|a|C|992
8Q4F|1|a|G|993
8Q4F|1|a|C|994
8Q4F|1|a|C|995
8Q4F|1|a|A|996
*
8Q4F|1|a|U|1159
8Q4F|1|a|G|1160
8Q4F|1|a|C|1161
8Q4F|1|a|G|1162
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- Large ribosomal subunit protein uL13
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain y
- Large ribosomal subunit protein uL30
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