3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUGU*GCGC
Length
9 nucleotides
Bulged bases
8Q4F|1|a|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_213 not in the Motif Atlas
Geometric match to IL_8C3A_438
Geometric discrepancy: 0.2509
The information below is about IL_8C3A_438
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_54697.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
51

Unit IDs

8Q4F|1|a|G|1031
8Q4F|1|a|A|1032
8Q4F|1|a|U|1033
8Q4F|1|a|G|1034
8Q4F|1|a|U|1035
*
8Q4F|1|a|G|1120
8Q4F|1|a|C|1121
8Q4F|1|a|G|1122
8Q4F|1|a|C|1123

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL36A
Chain b
5S ribosomal RNA; 5S rRNA
Chain g
Large ribosomal subunit protein uL6
Chain l
50S ribosomal protein L16

Coloring options:


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