IL_8Q4F_213
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUGU*GCGC
- Length
- 9 nucleotides
- Bulged bases
- 8Q4F|1|a|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_213 not in the Motif Atlas
- Geometric match to IL_8C3A_438
- Geometric discrepancy: 0.2509
- The information below is about IL_8C3A_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8Q4F|1|a|G|1031
8Q4F|1|a|A|1032
8Q4F|1|a|U|1033
8Q4F|1|a|G|1034
8Q4F|1|a|U|1035
*
8Q4F|1|a|G|1120
8Q4F|1|a|C|1121
8Q4F|1|a|G|1122
8Q4F|1|a|C|1123
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- 50S ribosomal protein L16
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