IL_8Q5I_036
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_036 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.0588
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Q5I|1|1|G|987
8Q5I|1|1|A|988
8Q5I|1|1|G|989
8Q5I|1|1|G|990
8Q5I|1|1|U|991
8Q5I|1|1|A|992
8Q5I|1|1|A|993
*
8Q5I|1|1|U|1048
8Q5I|1|1|A|1049
8Q5I|1|1|A|1050
8Q5I|1|1|A|1051
8Q5I|1|1|U|1052
8Q5I|1|1|A|1053
8Q5I|1|1|U|1054
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain 2
- 60S ribosomal protein L21-A
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 60S ribosomal protein L5
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L10
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