IL_8Q5I_064

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8Q5I|1|1|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_064 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.083

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8Q5I|1|1|U|1623
8Q5I|1|1|C|1624
8Q5I|1|1|U|1625
8Q5I|1|1|U|1626
8Q5I|1|1|C|1627
*
8Q5I|1|1|G|1807
8Q5I|1|1|G|1808
8Q5I|1|1|A|1809
8Q5I|1|1|A|1810
8Q5I|1|1|U|1811
8Q5I|1|1|A|1812

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L27