IL_8Q5I_080
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UGAUGG*UGUUGACA
- Length
- 14 nucleotides
- Bulged bases
- 8Q5I|1|1|U|2137, 8Q5I|1|1|U|2153, 8Q5I|1|1|C|2157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_080 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.057
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|1|U|2134
8Q5I|1|1|G|2135
8Q5I|1|1|A|2136
8Q5I|1|1|U|2137
8Q5I|1|1|G|2138
8Q5I|1|1|G|2139
*
8Q5I|1|1|U|2151
8Q5I|1|1|G|2152
8Q5I|1|1|U|2153
8Q5I|1|1|U|2154
8Q5I|1|1|G|2155
8Q5I|1|1|A|2156
8Q5I|1|1|C|2157
8Q5I|1|1|A|2158
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
Coloring options: