IL_8Q5I_114
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_114 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0662
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8Q5I|1|1|C|2990
8Q5I|1|1|U|2991
8Q5I|1|1|U|2992
8Q5I|1|1|A|2993
8Q5I|1|1|G|2994
8Q5I|1|1|U|2995
8Q5I|1|1|A|2996
8Q5I|1|1|C|2997
*
8Q5I|1|1|G|3002
8Q5I|1|1|G|3003
8Q5I|1|1|A|3004
8Q5I|1|1|A|3005
8Q5I|1|1|C|3006
8Q5I|1|1|C|3007
8Q5I|1|1|G|3008
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain AN
- 60S ribosomal protein L40-B
- Chain k
- 60S ribosomal protein L3
- Chain q
- 60S ribosomal protein L9-B
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