IL_8Q5I_161
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8Q5I|1|A|U|311, 8Q5I|1|A|C|349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_161 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0518
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8Q5I|1|A|U|309
8Q5I|1|A|A|310
8Q5I|1|A|U|311
8Q5I|1|A|C|312
8Q5I|1|A|A|313
8Q5I|1|A|A|314
*
8Q5I|1|A|U|346
8Q5I|1|A|U|347
8Q5I|1|A|U|348
8Q5I|1|A|C|349
8Q5I|1|A|A|350
8Q5I|1|A|A|351
8Q5I|1|A|C|352
8Q5I|1|A|G|353
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S8
- Chain M
- 40S ribosomal protein S11A
- Chain Y
- Ribosomal protein S23 (S12)
Coloring options: