IL_8QBT_142

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8QBT|1|i|A|532, 8QBT|1|i|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_142 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.157

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8QBT|1|i|G|515
8QBT|1|i|U|516
8QBT|1|i|G|517
8QBT|1|i|C|518
8QBT|1|i|C|519
8QBT|1|i|A|520
8QBT|1|i|G|521
*
8QBT|1|i|C|528
8QBT|1|i|G|529
8QBT|1|i|G|530
8QBT|1|i|U|531
8QBT|1|i|A|532
8QBT|1|i|A|533
8QBT|1|i|U|534
8QBT|1|i|A|535
8QBT|1|i|C|536

Current chains

Chain i

16S rRNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain t

30S ribosomal protein S12