IL_8QCQ_012
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAC*GAGUGAAAGAGAUC
- Length
- 18 nucleotides
- Bulged bases
- 8QCQ|1|A|G|550, 8QCQ|1|A|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_012 not in the Motif Atlas
- Homologous match to IL_4WF9_015
- Geometric discrepancy: 0.1247
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
8QCQ|1|A|G|528
8QCQ|1|A|C|529
8QCQ|1|A|A|530
8QCQ|1|A|C|531
*
8QCQ|1|A|G|542
8QCQ|1|A|A|543
8QCQ|1|A|G|544
8QCQ|1|A|U|545
8QCQ|1|A|G|546
8QCQ|1|A|A|547
8QCQ|1|A|A|548
8QCQ|1|A|A|549
8QCQ|1|A|G|550
8QCQ|1|A|A|551
8QCQ|1|A|G|552
8QCQ|1|A|A|553
8QCQ|1|A|U|554
8QCQ|1|A|C|555
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: