IL_8QCQ_025

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_025 not in the Motif Atlas

Homologous match to IL_7A0S_023

Geometric discrepancy: 0.3541

The information below is about IL_7A0S_023

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8QCQ|1|A|G|891
8QCQ|1|A|U|892
8QCQ|1|A|A|893
8QCQ|1|A|A|894
*
8QCQ|1|A|U|979
8QCQ|1|A|C|980

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30