IL_8QCQ_037

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_037 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8QCQ|1|A|U|1050
8QCQ|1|A|C|1051
8QCQ|1|A|C|1052
8QCQ|1|A|C|1053
8QCQ|1|A|A|1054
8QCQ|1|A|A|1055
8QCQ|1|A|A|1056
8QCQ|1|A|G|1057
*
8QCQ|1|A|C|1196
8QCQ|1|A|A|1197

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

Large ribosomal subunit protein bL20