IL_8QCQ_043

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_043 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.334

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8QCQ|1|A|A|1243
8QCQ|1|A|A|1244
8QCQ|1|A|G|1245
8QCQ|1|A|G|1246
8QCQ|1|A|G|1247
*
8QCQ|1|A|C|1279
8QCQ|1|A|G|1280
8QCQ|1|A|C|1281
8QCQ|1|A|U|1282
8QCQ|1|A|U|1283

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15