IL_8QCQ_044

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8QCQ|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_044 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0646

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8QCQ|1|A|C|1248
8QCQ|1|A|U|1249
8QCQ|1|A|G|1250
8QCQ|1|A|U|1251
8QCQ|1|A|G|1252
8QCQ|1|A|A|1253
8QCQ|1|A|A|1254
8QCQ|1|A|G|1255
*
8QCQ|1|A|U|1274
8QCQ|1|A|G|1275
8QCQ|1|A|G|1276
8QCQ|1|A|A|1277
8QCQ|1|A|G|1278

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20