IL_8QCQ_053

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

8QCQ|1|A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_053 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2483

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8QCQ|1|A|C|1463
8QCQ|1|A|A|1464
8QCQ|1|A|A|1465
8QCQ|1|A|U|1466
8QCQ|1|A|G|1467
*
8QCQ|1|A|C|1625
8QCQ|1|A|U|1626
8QCQ|1|A|A|1627
8QCQ|1|A|G|1628

Current chains

Chain A

23S rRNA

Nearby chains