IL_8QCQ_055

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

8QCQ|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_055 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.1234

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8QCQ|1|A|A|1483
8QCQ|1|A|U|1484
8QCQ|1|A|A|1485
8QCQ|1|A|G|1486
*
8QCQ|1|A|U|1599
8QCQ|1|A|G|1600
8QCQ|1|A|A|1601
8QCQ|1|A|U|1602
8QCQ|1|A|U|1603

Current chains

Chain A

23S rRNA

Nearby chains