IL_8QCQ_063
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8QCQ|1|A|G|1744
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_063 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0622
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QCQ|1|A|C|1731
8QCQ|1|A|G|1732
8QCQ|1|A|U|1733
8QCQ|1|A|A|1734
8QCQ|1|A|A|1735
8QCQ|1|A|C|1736
*
8QCQ|1|A|G|1741
8QCQ|1|A|G|1742
8QCQ|1|A|A|1743
8QCQ|1|A|G|1744
8QCQ|1|A|A|1745
8QCQ|1|A|A|1746
8QCQ|1|A|G|1747
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: