IL_8QCQ_078

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8QCQ|1|A|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_078 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0802

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8QCQ|1|A|G|2099
8QCQ|1|A|A|2100
*
8QCQ|1|A|U|2467
8QCQ|1|A|A|2468
8QCQ|1|A|C|2469
8QCQ|1|A|C|2470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

ApdA nascent chain

Chain C

50S ribosomal protein L2

Chain w

Transfer RNA; tRNA