IL_8QCQ_096

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_096 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0819

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8QCQ|1|A|U|2681
8QCQ|1|A|U|2682
8QCQ|1|A|A|2683
8QCQ|1|A|G|2684
8QCQ|1|A|U|2685
8QCQ|1|A|A|2686
8QCQ|1|A|C|2687
*
8QCQ|1|A|G|2692
8QCQ|1|A|G|2693
8QCQ|1|A|A|2694
8QCQ|1|A|C|2695
8QCQ|1|A|C|2696
8QCQ|1|A|G|2697

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6