IL_8QCQ_100
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAUAAG*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8QCQ|1|A|A|2794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_100 not in the Motif Atlas
- Homologous match to IL_4WF9_104
- Geometric discrepancy: 0.0664
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8QCQ|1|A|G|2766
8QCQ|1|A|A|2767
8QCQ|1|A|U|2768
8QCQ|1|A|A|2769
8QCQ|1|A|A|2770
8QCQ|1|A|G|2771
*
8QCQ|1|A|U|2791
8QCQ|1|A|G|2792
8QCQ|1|A|A|2793
8QCQ|1|A|A|2794
8QCQ|1|A|G|2795
8QCQ|1|A|C|2796
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- Large ribosomal subunit protein uL6
- Chain J
- 50S ribosomal protein L13
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