IL_8QCQ_125
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAUUAG*CGACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8QCQ|1|a|U|252, 8QCQ|1|a|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_125 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1022
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QCQ|1|a|C|250
8QCQ|1|a|A|251
8QCQ|1|a|U|252
8QCQ|1|a|U|253
8QCQ|1|a|A|254
8QCQ|1|a|G|255
*
8QCQ|1|a|C|285
8QCQ|1|a|G|286
8QCQ|1|a|A|287
8QCQ|1|a|C|288
8QCQ|1|a|G|289
8QCQ|1|a|A|290
8QCQ|1|a|U|291
8QCQ|1|a|G|292
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
Coloring options: