IL_8QCQ_135

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUUC*GGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_135 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3392

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8QCQ|1|a|C|468
8QCQ|1|a|G|469
8QCQ|1|a|U|470
8QCQ|1|a|U|471
8QCQ|1|a|C|472
*
8QCQ|1|a|G|478
8QCQ|1|a|G|479
8QCQ|1|a|G|480
8QCQ|1|a|C|481
8QCQ|1|a|G|482

Current chains

Chain a

16S rRNA

Nearby chains