IL_8QCQ_142

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUG*CAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_142 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2663

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8QCQ|1|a|G|610
8QCQ|1|a|A|611
8QCQ|1|a|U|612
8QCQ|1|a|G|613
*
8QCQ|1|a|C|643
8QCQ|1|a|A|644
8QCQ|1|a|U|645
8QCQ|1|a|U|646

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17