IL_8QCQ_155
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 8QCQ|1|a|C|944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_155 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1149
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8QCQ|1|a|G|943
8QCQ|1|a|C|944
8QCQ|1|a|A|945
*
8QCQ|1|a|U|1389
8QCQ|1|a|U|1390
8QCQ|1|a|C|1391
8QCQ|1|a|C|1392
8QCQ|1|a|C|1393
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- 30S ribosomal protein S9
- Chain w
- Transfer RNA; tRNA
Coloring options: