IL_8QCQ_165

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

8QCQ|1|a|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_165 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2643

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8QCQ|1|a|G|1134
8QCQ|1|a|U|1135
8QCQ|1|a|U|1136
8QCQ|1|a|G|1137
*
8QCQ|1|a|C|1154
8QCQ|1|a|A|1155
8QCQ|1|a|C|1156
8QCQ|1|a|U|1157
8QCQ|1|a|C|1158

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10