IL_8QCQ_168
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AACAAAG*CACAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_168 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.2171
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QCQ|1|a|A|1256
8QCQ|1|a|A|1257
8QCQ|1|a|C|1258
8QCQ|1|a|A|1259
8QCQ|1|a|A|1260
8QCQ|1|a|A|1261
8QCQ|1|a|G|1262
*
8QCQ|1|a|C|1293
8QCQ|1|a|A|1294
8QCQ|1|a|C|1295
8QCQ|1|a|A|1296
8QCQ|1|a|A|1297
8QCQ|1|a|A|1298
8QCQ|1|a|U|1299
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
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