IL_8QCQ_171

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_171 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0799

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8QCQ|1|a|C|1312
8QCQ|1|a|G|1313
8QCQ|1|a|G|1314
8QCQ|1|a|A|1315
8QCQ|1|a|U|1316
8QCQ|1|a|C|1317
*
8QCQ|1|a|G|1338
8QCQ|1|a|U|1339
8QCQ|1|a|G|1340
8QCQ|1|a|A|1341
8QCQ|1|a|A|1342
8QCQ|1|a|G|1343

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13