IL_8QCQ_173
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_173 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.0837
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QCQ|1|a|G|1410
8QCQ|1|a|C|1411
8QCQ|1|a|C|1412
8QCQ|1|a|C|1413
*
8QCQ|1|a|G|1507
8QCQ|1|a|U|1508
8QCQ|1|a|A|1509
8QCQ|1|a|A|1510
8QCQ|1|a|C|1511
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 8
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain w
- Transfer RNA; tRNA
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