IL_8QFD_017

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCCG*CGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCCG,CGGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_017 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.1721

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8QFD|1|5|C|467
8QFD|1|5|C|468
8QFD|1|5|C|469
8QFD|1|5|G|470
*
8QFD|1|5|C|674
8QFD|1|5|G|675
8QFD|1|5|G|676
8QFD|1|5|G|677

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

60S ribosomal protein L28