IL_8QFD_044
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8QFD|1|5|G|1617, 8QFD|1|5|A|1629, 8QFD|1|5|A|1630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_044 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0851
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QFD|1|5|G|1616
8QFD|1|5|G|1617
8QFD|1|5|G|1618
*
8QFD|1|5|U|1628
8QFD|1|5|A|1629
8QFD|1|5|A|1630
8QFD|1|5|U|1631
8QFD|1|5|C|1632
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain N
- 60S ribosomal protein L15
- Chain P
- 60S ribosomal protein L17
- Chain j
- Ribosomal protein L37
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